S. Linquist, T.A. Elliott, S.C. Kremer, T.R. Gregory, B. Saylor, K. Cottenie. (2026) “Transposon Ecology and the Octopus Genome.” BioEssays 48:3 https://doi.org/10.1002/bies.70124

S. Linquist, B. Fullerton, A. Grewal. (2023) “Epigenetic this, epigenetic that: comparing two digital humanities methods for investigating a slippery scientific term.” Synthese 202: 68 https://doi.org/10.1007/s11229-023-04265-5

S. Linquist. (2022) “Causal-role myopia and the functional investigation of junk DNA.” Biology & Philosophy 37(28) https://doi.org/10.1007/s10539-022-09853-2

S. Linquist. (2022) “Breaking news from genome-level ecology: not everything that is a Darwinian individual should be scientifically regarded as such.” In Azimuth special issue on Darwin’s Tangled Legacy.

S. Linquist, B. Fullerton. (2021) “Transposon dynamics and the epigenetic switch hypothesis.” Theoretical Medicine and Bioethics 42: 137–154 https://doi.org/10.1007/s11017-021-09548-x

S.C. Kremer, S. Linquist, B. Saylor, T.A. Elliott, T.R. Gregory, K. Cottenie. (2021) “Long-term TE persistence even without beneficial insertion.” BMC Genomics 22: 260 https://doi.org/10.1186/s12864-021-07568-4

S. Linquist, W.F. Doolittle, A.F. Palazzo. (2020) “Getting clear about the F-word in genomics.” PLOS Genetics 16(4): e1008702 https://doi.org/10.1371/journal.pgen.1008702

S.C. Kremer, S. Linquist, B. Saylor, T.A. Elliott, T.R. Gregory, K. Cottenie. (2020) “Transposable element persistence via potential genome-level ecosystem engineering.” BMC Genomics 21: 367 https://doi.org/10.1186/s12864-020-6763-1

S. Linquist. (2019) “Why ecology and evolution occupy distinct epistemic niches.” Philosophical Topics 47(1): 143-166.

S. Linquist, T.R. Gregory, T.A. Elliott, B. Saylor, S.C. Kremer, K. Cottenie. (2016) “Yes! There are resilient generalizations (or ‘laws’) in ecology.” The Quarterly Review of Biology 91(2): 119–131 https://pubmed.ncbi.nlm.nih.gov/27405221/

S. Linquist, K. Cottenie, T.A. Elliott, B. Saylor, S.C. Kremer, T.R. Gregory. (2015) “Applying ecological models to communities of genetic elements: the case of neutral theory.” Molecular Ecology 24(13): 3232–3242 https://pubmed.ncbi.nlm.nih.gov/25919906/

T.A. Elliott, S. Linquist, T.R. Gregory. (2014) “Conceptual and empirical challenges of ascribing functions to transposable elements.” The American Naturalist 184(1): 14–24 https://pubmed.ncbi.nlm.nih.gov/24921597/

B. Saylor, T.A. Elliott, S. Linquist, S.C. Kremer, T.R. Gregory, K. Cottenie. (2013) “A novel application of ecological analyses to assess transposable element distributions in the genome of the domestic cow, Bos taurus.” Genome 56(9): 521–533 https://pubmed.ncbi.nlm.nih.gov/24168673/

B. Saylor, S. Linquist, K. Cottenie, T.A. Elliott, S.C. Kremer, T.R. Gregory. (2013) “Distinguishing ecological from evolutionary approaches to transposable elements.” Biological Reviews 88: 573–584 https://pubmed.ncbi.nlm.nih.gov/23347261/